X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=nmdscommand.cpp;h=e2a3712a410738b0396884accc41bdd555caa735;hb=e0ce7cbc93d7d2fbb753ca694182db092a0ea0e7;hp=da82784f56124d5a360294fb9cc7c4b6b1114307;hpb=19fcbbdba99658f5eca244803280f9ee7f9f6607;p=mothur.git

diff --git a/nmdscommand.cpp b/nmdscommand.cpp
index da82784..e2a3712 100644
--- a/nmdscommand.cpp
+++ b/nmdscommand.cpp
@@ -141,22 +141,22 @@ NMDSCommand::NMDSCommand(string option)  {
 			}
 			
 			string temp = validParameter.validFile(parameters, "mindim", false);	if (temp == "not found") {	temp = "2";	}
-			convert(temp, mindim);
+			m->mothurConvert(temp, mindim);
 			
 			temp = validParameter.validFile(parameters, "maxiters", false);	if (temp == "not found") {	temp = "500";	}
-			convert(temp, maxIters);
+			m->mothurConvert(temp, maxIters);
 			
 			temp = validParameter.validFile(parameters, "iters", false);	if (temp == "not found") {	temp = "10";	}
-			convert(temp, iters);
+			m->mothurConvert(temp, iters);
 			
 			temp = validParameter.validFile(parameters, "maxdim", false);	if (temp == "not found") {	temp = "2";	}
-			convert(temp, maxdim);
+			m->mothurConvert(temp, maxdim);
 			
 			temp = validParameter.validFile(parameters, "epsilon", false);	if (temp == "not found") {	temp = "0.000000000001";	}
-			convert(temp, epsilon); 
+			m->mothurConvert(temp, epsilon); 
 			
 			if (mindim < 1) { m->mothurOut("mindim must be at least 1."); m->mothurOutEndLine(); abort = true; }
-			if (maxdim < mindim) { m->mothurOut("maxdim must be greater than mindim."); m->mothurOutEndLine(); abort = true; }
+			if (maxdim < mindim) { maxdim = mindim; }
 		}
 		
 	}