X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=nmdscommand.cpp;h=28bf3978f7344fe0f405717ad80adc8851e2cffd;hb=5bb0453ee6ab8f7e700b5d0c61a84fdc73db4976;hp=4adb57c6147c544ab9284996d85a8bf4db9e55e2;hpb=e6c4a7223199d800d496356604eb34dfe273673d;p=mothur.git

diff --git a/nmdscommand.cpp b/nmdscommand.cpp
index 4adb57c..28bf397 100644
--- a/nmdscommand.cpp
+++ b/nmdscommand.cpp
@@ -127,7 +127,7 @@ NMDSCommand::NMDSCommand(string option)  {
 				outputDir += m->hasPath(phylipfile); //if user entered a file with a path then preserve it	
 			}
 			
-			string temp = validParameter.validFile(parameters, "mindim", false);	if (temp == "not found") {	temp = "1";	}
+			string temp = validParameter.validFile(parameters, "mindim", false);	if (temp == "not found") {	temp = "2";	}
 			convert(temp, mindim);
 			
 			temp = validParameter.validFile(parameters, "maxiters", false);	if (temp == "not found") {	temp = "500";	}
@@ -159,8 +159,8 @@ void NMDSCommand::help(){
 		m->mothurOut("The nmds command parameters are phylip, axes, mindim, maxdim, maxiters, iters and epsilon."); m->mothurOutEndLine();
 		m->mothurOut("The phylip parameter allows you to enter your distance file."); m->mothurOutEndLine();
 		m->mothurOut("The axes parameter allows you to enter a file containing a starting configuration."); m->mothurOutEndLine();
-		m->mothurOut("The maxdim parameter allows you to select how maximum dimensions to use. Default=2"); m->mothurOutEndLine();
-		m->mothurOut("The mindim parameter allows you to select how minimum dimensions to use. Default=1"); m->mothurOutEndLine();
+		m->mothurOut("The maxdim parameter allows you to select the maximum dimensions to use. Default=2"); m->mothurOutEndLine();
+		m->mothurOut("The mindim parameter allows you to select the minimum dimensions to use. Default=2"); m->mothurOutEndLine();
 		m->mothurOut("The maxiters parameter allows you to select the maximum number of iters to try with each random configuration. Default=500"); m->mothurOutEndLine();
 		m->mothurOut("The iters parameter allows you to select the number of random configuration to try. Default=10"); m->mothurOutEndLine();
 		m->mothurOut("The epsilon parameter allows you to select set an acceptable stopping point. Default=1e-12."); m->mothurOutEndLine();