X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=neurodebian.cfg;h=f813594de3101d00acb0bb19daeb4841a6667078;hb=c34b8edfbd0305f324c0b3dafc2491694d94db71;hp=98190b24de23d725e4a66f7a3682e6f5c1aed0f7;hpb=5d8ae63cc7bf0117c74232192de73430b25947b0;p=neurodebian.git diff --git a/neurodebian.cfg b/neurodebian.cfg index 98190b2..f813594 100644 --- a/neurodebian.cfg +++ b/neurodebian.cfg @@ -5,19 +5,35 @@ pkgquery_url = http://dde.debian.net/dde/q/udd # Packages listed in the following taskfiles will be featured on the website # _if_ they are also present in the repository select taskfiles = + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev + svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/psychology # Additional selection filter (similar to 'select taskfiles'), only listing # package names select names = libnifti2 odin mitools afni-atlases python-pyssdh python-networkx r-cran-glmnet python-rpy2 python-nibabel-snapshot - python-scikits-learn python-mdp python-mlpy python-openpyxl + python-sklearn python-scikits-learn python-mdp python-mlpy python-openpyxl libgdf-dev matlab-support + svgtune rorden-mri-tutorial caret-data python-joblib python-sphinx fail2ban + python-pandas python-skimage neurodebian numdiff nuitka pytables + guacamole freeipmi # Information about prospective packages to be imported from taskfiles prospective = + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/distributedcomputing + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/bci + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/electrophysiology svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-cognitive + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-datasets + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/neuroscience-modeling + svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/psychophysics svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/imaging-dev @@ -25,57 +41,125 @@ prospective = # alias a package name from a blend taskfile to an arbitray number of additional # package names -- if the original name should appear in the package list it has # to be added as an alias as well +cctools = coop-computing-tools mni-icbm152-nlin-2009 = mni-icbm152-nlin-2009a mni-icbm152-nlin-2009b mni-icbm152-nlin-2009c -fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds +eeglab = matlab-eeglab11 eeglab11-sampledata +fsl = fsl fsl-doc fsl-atlases fsl-possum-data fsl-first-data fsl-feeds fsl-mni152-templates fslview = fslview fslview-doc -python-mvpa = python-mvpa python-mvpa-snapshot +python-mvpa = python-mvpa python-mvpa2 libgiftiio-dev = libgiftiio-dev gifti-bin openmeeg-tools = openmeeg-tools libopenmeeg-dev python-openmeeg libopenmeeg1 libbiosig-dev = libbiosig-dev python-biosig octave-biosig biosig-tools libbiosig0 +libgdf-dev = libgdf-dev libgdf0 libgdf0-dbg libgdf-dev gdf-tools octave-gdf matlab-gdf +spm8 = matlab-spm8 spm8-data spm8-doc +libfreenect-dev = libfreenect0.0 libfreenect-dev libfreenect-demos python-freenect freenect +psychtoolbox-3 = octave-psychtoolbox-3 matlab-psychtoolbox-3 psychtoolbox-3-doc +openmeeg = libopenmeeg-dev libopenmeeg1 openmeeg-tools python-openmeeg +pandas = python-pandas +pysurfer = python-surfer +pyxnat = python-pyxnat +openwalnut = openwalnut-qt4 +neurodebian = neurodebian-dev neurodebian-desktop neurodebian-keyring neurodebian-popularity-contest neurodebian-guest-additions +pytables = python-tables +isis = isis-utils libisis-core-dev python-isis libisis-ioplugins-common libisis-ioplugins-dicom libisis-qt4-dev +guacamole = guacamole guacd libguac-dev libguac3 libguac-client-rdp guacamole-tomcat libguac-client-vnc0 [mirrors] +au = http://mirror.aarnet.edu.au/pub/neurodebian +de-md = http://apsy.gse.uni-magdeburg.de/debian +de-v = http://nd.zetatech.org +gr = http://neurobot.bio.auth.gr/neurodebian +jp = http://neuroimaging.sakura.ne.jp/neurodebian +ua = http://www.neuro.webdisk.com.ua +us-ca = http://neurodeb.pirsquared.org us-nh = http://neuro.debian.net/debian us-tn = http://masi.vuse.vanderbilt.edu/neurodebian -de = http://apsy.gse.uni-magdeburg.de/debian + +[mirror names] +au = Australia (AARNET) +de-md = Germany (University of Magdeburg) +de-v = Germany (Nikolaus Valentin Hänel, Vogtland) +gr = Greece (Aristotle University of Thessaloniki) +jp = Japan (Kiyotaka Nemoto) +ua = Ukraine (Iaroslav Iurchenko) +us-ca = USA-CA (Paul Ivanov, California) +us-nh = USA-NH (Dartmouth College) +us-tn = USA-TN (Vanderbilt) [neurodebian] # Release files of all repositories to be contained in the website +# Package info files for all these releases will be downloaded. A long list +# of releases makes a website update a lot slower releases = - http://neuro.debian.net/debian/dists/dapper/Release - http://neuro.debian.net/debian/dists/gutsy/Release + http://neuro.debian.net/debian/dists/data/Release http://neuro.debian.net/debian/dists/hardy/Release - http://neuro.debian.net/debian/dists/intrepid/Release - http://neuro.debian.net/debian/dists/jaunty/Release http://neuro.debian.net/debian/dists/karmic/Release http://neuro.debian.net/debian/dists/lucid/Release http://neuro.debian.net/debian/dists/maverick/Release - http://neuro.debian.net/debian/dists/etch/Release - http://neuro.debian.net/debian/dists/lenny/Release + http://neuro.debian.net/debian/dists/natty/Release + http://neuro.debian.net/debian/dists/oneiric/Release + http://neuro.debian.net/debian/dists/precise/Release http://neuro.debian.net/debian/dists/squeeze/Release + http://neuro.debian.net/debian/dists/wheezy/Release http://neuro.debian.net/debian/dists/sid/Release [release codenames] -etch = Debian GNU/Linux 4.0 (etch) +# each item here will result in the respective release being advertised +# on the website, i.e. sources.list being available and config form contains +# a corresponding item -- please prune an entry when a release is no longer +# supported +# the 'data' entry should not be changed, as this exact setting also serves as +# a test condition in the DDE code +data = Datasets (data) +#etch = Debian GNU/Linux 4.0 (etch) lenny = Debian GNU/Linux 5.0 (lenny) -squeeze = Debian testing (squeeze) -#squeeze = Debian 6.0 (squeeze) -#wheezy = Debian testing (wheezy) +squeeze = Debian GNU/Linux 6.0 (squeeze) +wheezy = Debian testing (wheezy) sid = Debian unstable (sid) -#dapper = Ubuntu 06.06 LTS "Dapper Drake" (dapper) -#edgy = Ubuntu 06.10 "Edgy Eft" (edgy) -#gutsy = Ubuntu 07.10 "Gutsy Gibbon" (gutsy) +# EOL: May 12 2011 (Desktop) April 2013 (Server) hardy = Ubuntu 08.04 LTS "Hardy Heron" (hardy) -intrepid = Ubuntu 08.10 "Intrepid Ibex" (intrepid) -jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty) +# EOL: Oct 23 2010 +#jaunty = Ubuntu 09.04 "Jaunty Jackalope" (jaunty) +# EOL: April 2011 karmic = Ubuntu 09.10 "Karmic Koala" (karmic) -lucid = Ubuntu 10.4 LTS "Lucid Lynx" (lucid) -maverick = Ubuntu upcoming release "Maverick Meerkat" (maverick) +# EOL: April 2013 (Desktop) April 2015 (Server) +lucid = Ubuntu 10.04 LTS "Lucid Lynx" (lucid) +# EOL: April 2012 +maverick = Ubuntu 10.10 "Maverick Meerkat" (maverick) +# EOL: October 2012 +natty = Ubuntu 11.04 "Natty Narwhal" (natty) +# EOL: April 2013 +oneiric = Ubuntu 11.10 "Oneiric Ocelot" (oneiric) +# EOL: April 2017 (LTS) +precise = Ubuntu 12.04 LTS "Precise Pangolin" (precise) + +[release backport ids] +# the purpose of these ids is to have version suffixes for backported packages +# that allow proper sorting (upgradability) across distribution releases +# For Debian we'll use ndXX (where XX is the version of the Debian release, +# e.g. 50; analog to backports.org) and for Ubuntu we'll use ndXX.XX. +data = nd +etch = nd40 +lenny = nd50 +squeeze = nd60 +wheezy = nd70 +sid = nd +hardy = nd08.04 +intrepid = nd08.10 +jaunty = nd09.04 +karmic = nd09.10 +lucid = nd10.04 +maverick = nd10.10 +natty = nd11.04 +oneiric = nd11.10 +precise = nd12.04 [nitrc ids] afni = 23 ants = 130 camino = 253 caret = 34 +cmtk = 212 connectomeviewer = 355 dicomnifti = 218 fsl = 25 @@ -83,20 +167,25 @@ fslview = 25 gifti-bin = 75 imagej = 256 itksnap = 110 +jist = 228 libminc-dev = 129 -minc-tools = 129 libgiftiio-dev = 75 libnifti2 = 26 libnifti-dev = 26 -nifti-bin = 26 -odin = 153 +matlab-spm8 = 24 +minc-tools = 129 +mipav = 70 mitools = 153 mricron = 152 mrtrix = 128 +nifti-bin = 26 +odin = 153 python-mvpa = 162 python-nipype = 325 +python-surfer = 517 +python-pyxnat = 453 slicer = 50 +spm8 = 24 voxbo = 73 -mipav = 70 -jist = 228 +openmeeg = 514