X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurout.h;h=b19c05a68381c3ca96e19264e0eca931e22a0895;hb=ee8403d4eb5760187d62b42a9cf4272de8fc0ec4;hp=db1a4f1ca4e6c4207a652d05ac20b24157dfa46d;hpb=42d411d3362186465347aeabdd3155bd3259671e;p=mothur.git

diff --git a/mothurout.h b/mothurout.h
index db1a4f1..b19c05a 100644
--- a/mothurout.h
+++ b/mothurout.h
@@ -82,6 +82,7 @@ class MothurOut {
 		int appendFiles(string, string);
 		int renameFile(string, string); //oldname, newname
 		string getFullPathName(string);
+        string findProgramPath(string programName);
 		string hasPath(string);
 		string getExtension(string);
 		string getPathName(string);
@@ -96,6 +97,7 @@ class MothurOut {
 		string getline(istringstream&);
 		void gobble(istream&);
 		void gobble(istringstream&);
+        vector<string> splitWhiteSpace(string& rest, char[], int);
 		map<string, int> readNames(string);
 		int readNames(string, map<string, string>&);
 		int readNames(string, map<string, vector<string> >&);
@@ -130,6 +132,7 @@ class MothurOut {
 		void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
 		int removeConfidences(string&);
+        string makeList(vector<string>&);
 		
 		//math operation
 		int factorial(int num);