X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurout.h;h=53d4250c771cdbdac15c715c44d97fabf0a92c1a;hb=e8e13c129ba8184ec5932a090773f353f3ae3406;hp=ac47d79f7d92b113f58dbe421fdbaad892b2b175;hpb=fdfbfe59134dd7dd3e49d90609d129128ba2d370;p=mothur.git

diff --git a/mothurout.h b/mothurout.h
index ac47d79..53d4250 100644
--- a/mothurout.h
+++ b/mothurout.h
@@ -111,6 +111,7 @@ class MothurOut {
 		int readNames(string, vector<seqPriorityNode>&, map<string, string>&);
 		int mothurRemove(string);
 		bool mothurConvert(string, int&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
+        bool mothurConvert(string, intDist&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
 		bool mothurConvert(string, float&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
 		bool mothurConvert(string, double&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
 	
@@ -139,7 +140,9 @@ class MothurOut {
 		void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
 		int removeConfidences(string&);
+        string removeQuotes(string);
         string makeList(vector<string>&);
+        bool isSubset(vector<string>, vector<string>); //bigSet, subset
 		
 		//math operation
 		int factorial(int num);
@@ -148,6 +151,7 @@ class MothurOut {
 		float roundDist(float, int);
 		unsigned int fromBase36(string);
 		int getRandomIndex(int); //highest
+        double getStandardDeviation(vector<int>&);
 
 		int control_pressed;
 		bool executing, runParse, jumble, gui, mothurCalling, debug;