X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurout.h;h=12de987e231247a4fb195aef20054bd94dacd375;hb=597560b3c23f03d0069082cf096ce65e0c087519;hp=e61490267270680e6800cfa31a68b47cb1bbbbc3;hpb=88fbc534a92cb91900e98a3288dfa1f68828b69b;p=mothur.git

diff --git a/mothurout.h b/mothurout.h
index e614902..12de987 100644
--- a/mothurout.h
+++ b/mothurout.h
@@ -12,6 +12,22 @@
 
 #include "mothur.h"
 
+/***********************************************/
+struct logger {
+    
+    logger() {}
+    ~logger() {}
+    
+    template< class T >
+    logger& operator <<( const T& o ) {
+        cout << o; return *this;
+    }
+    
+    logger& operator<<(ostream& (*m)(ostream&) ) {
+        cout << m; return *this;
+    }
+    
+}; 
 /***********************************************/
 
 class MothurOut {
@@ -53,7 +69,7 @@ class MothurOut {
 		vector<string> binLabelsInFile;
 		vector<string> currentBinLabels;
 		string saveNextLabel, argv, sharedHeaderMode;
-		bool printedHeaders;
+		bool printedHeaders, commandInputsConvertError;
 		
 		//functions from mothur.h
 		//file operations
@@ -84,6 +100,9 @@ class MothurOut {
 		int readNames(string, map<string, vector<string> >&);
 		int readNames(string, vector<seqPriorityNode>&, map<string, string>&);
 		int mothurRemove(string);
+		bool mothurConvert(string, int&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
+		bool mothurConvert(string, float&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
+		bool mothurConvert(string, double&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this.
 	
 		
 		//searchs and checks
@@ -94,8 +113,10 @@ class MothurOut {
 		void getNumSeqs(ifstream&, int&);
 		int getNumSeqs(ifstream&);
 		int getNumNames(string);
+		int getNumChar(string, char);
 		bool isTrue(string);
 		bool isContainingOnlyDigits(string);
+		bool isNumeric1(string);
 	
 		
 		//string manipulation
@@ -197,6 +218,7 @@ class MothurOut {
 			flowfile = "";
 			gui = false;
 			printedHeaders = false;
+			commandInputsConvertError = false;
 			sharedHeaderMode = "";
 		}
 		~MothurOut();