X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurout.h;h=0d2e86f24cb258b24e78367e1427fc7ee2bc7d31;hb=55bbd10379db27def51cec72a8819d775f73e45b;hp=33384034ae55ee7f11c72b48378fa59bfe29e16e;hpb=5b72d1cf3fa48730e5bb70d59cced1e43e1fe424;p=mothur.git

diff --git a/mothurout.h b/mothurout.h
index 3338403..0d2e86f 100644
--- a/mothurout.h
+++ b/mothurout.h
@@ -120,7 +120,9 @@ class MothurOut {
 		bool checkReleaseVersion(ifstream&, string);
 		bool anyLabelsToProcess(string, set<string>&, string);
 		bool inUsersGroups(vector<string>, vector<string>);
+        bool inUsersGroups(vector<int>, vector< vector<int> >);
 		bool inUsersGroups(string, vector<string>);
+        bool inUsersGroups(int, vector<int>);
 		void getNumSeqs(ifstream&, int&);
 		int getNumSeqs(ifstream&);
 		int getNumNames(string);
@@ -139,7 +141,9 @@ class MothurOut {
 		void splitAtDash(string&, vector<string>&);
 		void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
+        vector<string> splitWhiteSpaceWithQuotes(string);
 		int removeConfidences(string&);
+        string removeQuotes(string);
         string makeList(vector<string>&);
         bool isSubset(vector<string>, vector<string>); //bigSet, subset
 		
@@ -150,6 +154,7 @@ class MothurOut {
 		float roundDist(float, int);
 		unsigned int fromBase36(string);
 		int getRandomIndex(int); //highest
+        double getStandardDeviation(vector<int>&);
 
 		int control_pressed;
 		bool executing, runParse, jumble, gui, mothurCalling, debug;