X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurout.cpp;h=7d40e80ead727205f4bcc00269f78bd7f81057ca;hb=035f86272c776e1cccaa47021e26782e49cd41e7;hp=d9df5a078b425b773611d25b2616e3f66a58bddf;hpb=5b72d1cf3fa48730e5bb70d59cced1e43e1fe424;p=mothur.git

diff --git a/mothurout.cpp b/mothurout.cpp
index d9df5a0..7d40e80 100644
--- a/mothurout.cpp
+++ b/mothurout.cpp
@@ -2890,8 +2890,53 @@ int MothurOut::removeConfidences(string& tax) {
 	}
 }
 /**************************************************************************************************/
-
-
+string MothurOut::removeQuotes(string tax) {
+	try {
+		
+		string taxon;
+		string newTax = "";
+		
+		for (int i = 0; i < tax.length(); i++) {
+			
+			if (control_pressed) { return newTax; }
+            
+            if ((tax[i] != '\'') && (tax[i] != '\"')) { newTax += tax[i]; }
+			
+        }
+		
+		return newTax;
+	}
+	catch(exception& e) {
+		errorOut(e, "MothurOut", "removeQuotes");
+		exit(1);
+	}
+}
+/**************************************************************************************************/
+// function for calculating standard deviation
+double MothurOut::getStandardDeviation(vector<int>& featureVector){
+    try {
+        //finds sum
+        double average = 0; 
+        for (int i = 0; i < featureVector.size(); i++) { average += featureVector[i]; }
+        average /= (double) featureVector.size();
+        
+        //find standard deviation
+        double stdDev = 0;
+        for (int i = 0; i < featureVector.size(); i++) { //compute the difference of each dist from the mean, and square the result of each
+            stdDev += ((featureVector[i] - average) * (featureVector[i] - average));
+        }
+          
+        stdDev /= (double) featureVector.size(); 
+        stdDev = sqrt(stdDev);
+        
+        return stdDev;
+    }
+	catch(exception& e) {
+		errorOut(e, "MothurOut", "getStandardDeviation");
+		exit(1);
+	}
+}
+/**************************************************************************************************/