X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurout.cpp;h=32f3b85819bb05206cb789d4e41e70d02fcd2e65;hb=74dc92cf53df65fd8b14d8eaf35489bbecbccac6;hp=90d6f37434d7cb4df231817be6d1759df80b45bb;hpb=4c5e7a20a03ddc6feb49ff9d21fcb4c79bc5508d;p=mothur.git

diff --git a/mothurout.cpp b/mothurout.cpp
index 90d6f37..32f3b85 100644
--- a/mothurout.cpp
+++ b/mothurout.cpp
@@ -2020,6 +2020,46 @@ bool MothurOut::isContainingOnlyDigits(string input) {
 	}
 }
 /**************************************************************************************************/
+int MothurOut::removeConfidences(string& tax) {
+	try {
+		
+		string taxon;
+		string newTax = "";
+		
+		while (tax.find_first_of(';') != -1) {
+			
+			if (control_pressed) { return 0; }
+			
+			//get taxon
+			taxon = tax.substr(0,tax.find_first_of(';'));
+	
+			int pos = taxon.find_last_of('(');
+			if (pos != -1) {
+				//is it a number?
+				int pos2 = taxon.find_last_of(')');
+				if (pos2 != -1) {
+					string confidenceScore = taxon.substr(pos+1, (pos2-(pos+1)));
+					if (isContainingOnlyDigits(confidenceScore)) {
+						taxon = taxon.substr(0, pos); //rip off confidence 
+					}
+				}
+			}
+			taxon += ";";
+			
+			tax = tax.substr(tax.find_first_of(';')+1, tax.length());
+			newTax += taxon;
+		}
+		
+		tax = newTax;
+		
+		return 0;
+	}
+	catch(exception& e) {
+		errorOut(e, "MothurOut", "removeConfidences");
+		exit(1);
+	}
+}
+/**************************************************************************************************/