X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurmetastats.h;h=c707b642f05ebe96b830b2babb6abf90929b04c3;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=d80b68709b7bbd8417a26e47b3b6596d9a4fec77;hpb=d0051dc9939d3477bd92b42c86bcd3eda743b955;p=mothur.git

diff --git a/mothurmetastats.h b/mothurmetastats.h
index d80b687..c707b64 100644
--- a/mothurmetastats.h
+++ b/mothurmetastats.h
@@ -23,9 +23,12 @@ class MothurMetastats {
 	
 	private:
 		MothurOut* m;
-		int row, column, numPermutations;
+		int row, column, numPermutations, secondGroupingStart;
 		double threshold;
-	
+        
+        vector<double> permuted_pvalues(vector< vector<double> >&, vector<double>&, vector< vector<double> >&);
+        vector<double> permute_and_calc_ts(vector< vector<double> >&);
+    
 		int start(vector<double>&, int, vector<double>&, vector< vector<double> >&); //Find the initial values for the matrix
 		int meanvar(vector<double>&, int, vector<double>&);
 		int testp(vector<double>&, vector<double>&, vector<double>&, int, vector<double>&, vector<double>&);