X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurmetastats.h;h=4d6cf9166816f9f775e97eedc8a3231ec6daecd8;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=6c1f2f827dbdb4b0bdce33e573604ffe90082706;hpb=783b9ef8e739307aed392f35970701f6b53390fb;p=mothur.git

diff --git a/mothurmetastats.h b/mothurmetastats.h
index 6c1f2f8..4d6cf91 100644
--- a/mothurmetastats.h
+++ b/mothurmetastats.h
@@ -23,15 +23,26 @@ class MothurMetastats {
 	
 	private:
 		MothurOut* m;
-		int row, column, numPermutations;
+		int row, column, numPermutations, secondGroupingStart;
 		double threshold;
-	
+        
+    vector<double> permuted_pvalues(vector< vector<double> >&, vector<double>&, vector< vector<double> >&);
+    vector<double> permute_and_calc_ts(vector< vector<double> >&);
+    
 		int start(vector<double>&, int, vector<double>&, vector< vector<double> >&); //Find the initial values for the matrix
 		int meanvar(vector<double>&, int, vector<double>&);
 		int testp(vector<double>&, vector<double>&, vector<double>&, int, vector<double>&, vector<double>&);
 		int permute_matrix(vector<double>&, vector<double>&, int, vector<double>&, vector<double>&, vector<double>&);
 		int permute_array(vector<int>&);
 		int calc_twosample_ts(vector<double>&, int, vector<double>&, vector<double>&, vector<double>&);
+		double smoothSpline(vector<double>&, vector<double>&, int);
+		vector<double> calc_qvalues(vector<double>&);
+		vector<double> sknot1(double*, int);
+		int nkn(int);
+		int OrderPValues(int, int, vector<double>&, vector<int>&);
+		int swapElements(int, int, vector<double>&, vector<int>&);
+		vector<int> getSequence(int, int, int);
+		
 };
 	
 #endif