X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurmetastats.h;fp=mothurmetastats.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=4d6cf9166816f9f775e97eedc8a3231ec6daecd8;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/mothurmetastats.h b/mothurmetastats.h
deleted file mode 100644
index 4d6cf91..0000000
--- a/mothurmetastats.h
+++ /dev/null
@@ -1,49 +0,0 @@
-#ifndef MOTHUR_METASTATS
-#define MOTHUR_METASTATS
-
-/*
- *  mothurmetastats.h
- *  Mothur
- *
- *  Created by westcott on 7/6/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "mothurout.h"
-
-class MothurMetastats {
-	
-	public:
-		MothurMetastats(double, int); //threshold, numPermutations
-		~MothurMetastats();
-	
-		int runMetastats(string, vector< vector<double> >&, int); //outputFileName, data, secondGroupingStart
-	
-	private:
-		MothurOut* m;
-		int row, column, numPermutations, secondGroupingStart;
-		double threshold;
-        
-    vector<double> permuted_pvalues(vector< vector<double> >&, vector<double>&, vector< vector<double> >&);
-    vector<double> permute_and_calc_ts(vector< vector<double> >&);
-    
-		int start(vector<double>&, int, vector<double>&, vector< vector<double> >&); //Find the initial values for the matrix
-		int meanvar(vector<double>&, int, vector<double>&);
-		int testp(vector<double>&, vector<double>&, vector<double>&, int, vector<double>&, vector<double>&);
-		int permute_matrix(vector<double>&, vector<double>&, int, vector<double>&, vector<double>&, vector<double>&);
-		int permute_array(vector<int>&);
-		int calc_twosample_ts(vector<double>&, int, vector<double>&, vector<double>&, vector<double>&);
-		double smoothSpline(vector<double>&, vector<double>&, int);
-		vector<double> calc_qvalues(vector<double>&);
-		vector<double> sknot1(double*, int);
-		int nkn(int);
-		int OrderPValues(int, int, vector<double>&, vector<int>&);
-		int swapElements(int, int, vector<double>&, vector<int>&);
-		vector<int> getSequence(int, int, int);
-		
-};
-	
-#endif
-