X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothurfisher.h;fp=mothurfisher.h;h=88557d4656eb639ff5a19be66489857551faa50a;hb=19fcbbdba99658f5eca244803280f9ee7f9f6607;hp=0000000000000000000000000000000000000000;hpb=65b6a38d00b3a72021611211e7c25392022c69ed;p=mothur.git

diff --git a/mothurfisher.h b/mothurfisher.h
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+#ifndef MOTHUR_FISHER
+#define MOTHUR_FISHER
+
+/*
+ *  mothurfisher.h
+ *  Mothur
+ *
+ *  Created by westcott on 7/8/11.
+ *  Copyright 2011 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "mothurout.h"
+
+class MothurFisher {
+	
+public:
+	MothurFisher(){}
+	~MothurFisher(){}
+	
+	double fexact(double, double, double, double);
+	
+private:
+	MothurOut* m;
+	double sleft, sright, sless, slarg;
+	double sn11,sn1_,sn_1,sn,sprob;
+	double lngamm(double);
+	double lnfact(double);
+	double lnbico(double, double);
+	double hyper_323(double, double, double, double);
+	double hyper(double);
+	double hyper0(double, double, double, double);
+	double exact(double, double, double, double);
+};
+
+
+#endif
+