X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothur.h;h=f8ec32363516bcc6543569b57f313505796acef7;hb=fc1ed1ae1b022719176910ab71993bd6535810ad;hp=b0ad51e6736159e738d83d08a418f6cdecaac767;hpb=a5af3313f0221a8b41aa362d72eadb60a4dd6e27;p=mothur.git

diff --git a/mothur.h b/mothur.h
index b0ad51e..f8ec323 100644
--- a/mothur.h
+++ b/mothur.h
@@ -57,6 +57,7 @@
 	#include <sys/wait.h>
 	#include <sys/time.h>
 	#include <sys/resource.h>
+	#include <sys/types.h>
 	#include <sys/stat.h>
 	#include <unistd.h>
 	
@@ -70,6 +71,8 @@
 	#include <direct.h> //get cwd
 	#include <windows.h>
 	#include <psapi.h>
+	#include <direct.h>
+	#include <tchar.h>
 
 #endif
 
@@ -125,6 +128,37 @@ struct distlinePair {
 	
 };
 /************************************************************/
+struct seqPriorityNode {
+	int numIdentical;
+	string seq;
+	string name;
+	seqPriorityNode() {}
+	seqPriorityNode(int n, string s, string nm) : numIdentical(n), seq(s), name(nm) {}
+	~seqPriorityNode() {}
+};
+/***************************************************************/
+struct spearmanRank {
+	string name;
+	float score;
+	
+	spearmanRank(string n, float s) : name(n), score(s) {}
+};
+//********************************************************************************************************************
+//sorts highest to lowest
+inline bool compareSpearman(spearmanRank left, spearmanRank right){
+	return (left.score > right.score);	
+} 
+//********************************************************************************************************************
+//sorts highest to lowest
+inline bool compareSeqPriorityNodes(seqPriorityNode left, seqPriorityNode right){
+	return (left.numIdentical > right.numIdentical);	
+} 
+//********************************************************************************************************************
+//sorts lowest to highest
+inline bool compareSpearmanReverse(spearmanRank left, spearmanRank right){
+	return (left.score < right.score);	
+} 
+/************************************************************/
 //sorts lowest to highest
 inline bool compareDistLinePairs(distlinePair left, distlinePair right){
 	return (left.end < right.end);	
@@ -221,5 +255,15 @@ string toString(const T&x, int i){
 }
 //**********************************************************************************************************************
 
+template<class T>
+T fromString(const string& s){
+	istringstream stream (s);
+	T t;
+	stream >> t;
+	return t;
+}
+
+//**********************************************************************************************************************
+
 #endif