X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothur.cpp;h=add60fa22f5c9a95137b651cf694dd6f27132ad7;hb=36a8526766106bce1412e530e99f9c699dd59105;hp=c60644d027d7fee1f1e18ce90b5a4458c411ef3b;hpb=0e14094b51dd81c07c6a56b7b51533eff2332339;p=mothur.git

diff --git a/mothur.cpp b/mothur.cpp
index c60644d..add60fa 100644
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -26,10 +26,10 @@ int main(int argc, char *argv[]){
 		bool bail = 0;
 
 		if(argc>1){
-			mothur = new BatchEngine(argv[1]);
+			mothur = new BatchEngine(argv[0], argv[1]);
 		}
 		else{
-			mothur = new InteractEngine();		
+			mothur = new InteractEngine(argv[0]);		
 		}
 
 		while(bail == 0)		{	bail = mothur->getInput();			}