X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothur.cpp;h=add60fa22f5c9a95137b651cf694dd6f27132ad7;hb=36a8526766106bce1412e530e99f9c699dd59105;hp=3a91aa6e595393111416cf04b367af0a8ca38e6f;hpb=bfbc55964f1977da72c2cea984288a427d370a59;p=mothur.git

diff --git a/mothur.cpp b/mothur.cpp
index 3a91aa6..add60fa 100644
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -13,26 +13,28 @@
 
 using namespace std;
 
+/**************************************************************************************************/
+
 GlobalData* GlobalData::_uniqueInstance = 0;
 
 int main(int argc, char *argv[]){
 	try {
-	//	srand(54321);
+		//srand(54321);
 		srand( (unsigned)time( NULL ) );
 
-		Engine* dotur;
+		Engine* mothur;
 		bool bail = 0;
 
 		if(argc>1){
-			dotur = new BatchEngine(argv[1]);
+			mothur = new BatchEngine(argv[0], argv[1]);
 		}
 		else{
-			dotur = new InteractEngine();		
+			mothur = new InteractEngine(argv[0]);		
 		}
 
-		while(bail == 0)		{	bail = dotur->getInput();			}
+		while(bail == 0)		{	bail = mothur->getInput();			}
 	
-		delete dotur;
+		delete mothur;
 	
 		return 0;
 	}
@@ -46,3 +48,5 @@ int main(int argc, char *argv[]){
 	}
 }
 
+/**************************************************************************************************/
+