X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothur.cpp;h=a95c381658009f988e6caff879181a9412851c3d;hb=e0fbf58358a72f20352cf2a43922ab6b5bdf0cf8;hp=6e61f8796b9d2256de9773d9621174cc677c8ad2;hpb=fbaa6c7ac44f857c1ece7c8199e9e7e09b4bbe74;p=mothur.git

diff --git a/mothur.cpp b/mothur.cpp
index 6e61f87..a95c381 100644
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -73,7 +73,18 @@ int main(int argc, char *argv[]){
 		
 		#ifdef MOTHUR_FILES
 			string temp = MOTHUR_FILES; 
+			
+			//add / to name if needed
+			string lastChar = temp.substr(temp.length()-1);
+			#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+				if (lastChar != "/") { temp += "/"; }
+			#else
+				if (lastChar != "\\") { temp += "\\"; }	
+			#endif
+			
+			temp = getFullPathName(temp);
 			m->setDefaultPath(temp);
+			
 			m->mothurOutJustToLog("Using default file location " + temp);
 			m->mothurOutEndLine(); m->mothurOutEndLine();
 		#endif