X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothur.cpp;h=4e064b142d896cb1060d98c9574e42a4355a9efb;hb=648ec37228eb16075ace911dd5a5773cdfe683da;hp=9208a25194ff36a252462f830d4a76a4f0d76b32;hpb=7597c66c08bac938fedcacc1f760186bc077b3f1;p=mothur.git

diff --git a/mothur.cpp b/mothur.cpp
index 9208a25..4e064b1 100644
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -41,9 +41,9 @@ int main(int argc, char *argv[]){
 
 		
 		//header
-		mothurOut("mothur v.1.4.1");
+		mothurOut("mothur v.1.7.0");
 		mothurOutEndLine();		
-		mothurOut("Last updated: 6/23/2009");
+		mothurOut("Last updated: 11/23/2009");
 		mothurOutEndLine();	
 		mothurOutEndLine();		
 		mothurOut("by");
@@ -51,12 +51,18 @@ int main(int argc, char *argv[]){
 		mothurOut("Patrick D. Schloss");
 		mothurOutEndLine();
 		mothurOutEndLine();			
-		mothurOut("Department of Microbiology");
-		mothurOutEndLine();		
-		mothurOut("pschloss@micro.umass.edu");
-		mothurOutEndLine();		
-		mothurOut("http://schloss.micro.umass.edu/mothur");
+		mothurOut("Department of Microbiology & Immunology");
 		mothurOutEndLine();	
+		mothurOut("University of Michigan");
+		mothurOutEndLine();			
+		mothurOut("pschloss@umich.edu");
+		mothurOutEndLine();		
+		mothurOut("http://www.mothur.org");
+		mothurOutEndLine();
+		mothurOutEndLine();
+		mothurOut("When using, please cite:");
+		mothurOutEndLine();
+		mothurOut("Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.");
 		mothurOutEndLine();	
 		mothurOutEndLine();		
 		mothurOut("Distributed under the GNU General Public License");
@@ -71,7 +77,7 @@ int main(int argc, char *argv[]){
 				
 		//srand(54321);
 		srand( (unsigned)time( NULL ) );
-
+		
 		Engine* mothur;
 		bool bail = 0;
 		string input;
@@ -86,9 +92,16 @@ int main(int argc, char *argv[]){
 			}
 		}
 		else{
-			mothur = new InteractEngine(argv[0]);		
+			mothur = new InteractEngine(argv[0]);	
 		}
+		
+		//used to intercept the terminate signal, so instead of terminating mothur it will end a command
+		//void (*prev_fn)(int);
+		//prev_fn = signal(SIGTERM, mothur->terminateCommand(0));
+		
+		//if (prev_fn==SIG_IGN) signal (SIGTERM,SIG_IGN);
 
+		
 		while(bail == 0)		{	bail = mothur->getInput();			}
 	
 		delete mothur;