X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mothur.cpp;fp=mothur.cpp;h=18d8d437c619a1a38386d21dc511de75db73e946;hb=260ae19c36cb11a53ddc5a75b5e507f8dd8b31d6;hp=eb5e8f92c105f708d56a6d4ce681e94aaa0453c3;hpb=d84bb41d7dadcfa2c67ce5edb9b94060e5659fa7;p=mothur.git

diff --git a/mothur.cpp b/mothur.cpp
index eb5e8f9..18d8d43 100644
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -82,7 +82,7 @@ int main(int argc, char *argv[]){
 				if (lastChar != "\\") { temp += "\\"; }	
 			#endif
 			
-			temp = getFullPathName(temp);
+			temp = m->getFullPathName(temp);
 			m->setDefaultPath(temp);
 			
 			m->mothurOutJustToLog("Using default file location " + temp);
@@ -192,11 +192,11 @@ int main(int argc, char *argv[]){
 
 			}else {
 				ofstream outNewLog;
-				openOutputFileAppend(newlogFileName, outNewLog);
+				m->openOutputFileAppend(newlogFileName, outNewLog);
 				outNewLog << endl << endl << "*********************************************************************************" << endl << endl;
 				outNewLog.close();
 				
-				appendFiles(logFileName, newlogFileName);
+				m->appendFiles(logFileName, newlogFileName);
 				remove(logFileName.c_str());
 			}
 		}else{