X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=misc%2Fsamtools.pl;h=a26ac10f47ad76cc273966b6f5ec1e05889a715b;hb=d5bc855849345e49683f398c766794cf16b01b6c;hp=6fba900efce35bee3907a2725cee4c5127789d32;hpb=0032bb2050f78182baa7fbf9b959540dce4636bd;p=samtools.git

diff --git a/misc/samtools.pl b/misc/samtools.pl
index 6fba900..a26ac10 100755
--- a/misc/samtools.pl
+++ b/misc/samtools.pl
@@ -6,7 +6,7 @@ use strict;
 use warnings;
 use Getopt::Std;
 
-my $version = '0.2.0';
+my $version = '0.2.1';
 &usage if (@ARGV < 1);
 
 my $command = shift(@ARGV);
@@ -82,7 +82,7 @@ Options: -D INT    maximum read depth [$opts{D}]
 
 sub snpFilter {
   my %opts = (f=>'', Q=>40, d=>3, w=>10, D=>0, N=>2, W=>10, q=>20, s=>50);
-  getopts('fs:w:q:Q:d:D:W:N:', \%opts);
+  getopts('f:s:w:q:Q:d:D:W:N:', \%opts);
   die(qq{
 Usage:   samtools.pl snpFilter [options] <cns2snp.snp>