X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=misc%2Fbamcheck.c;h=efccf9a112703f7801e5e523598f06ea447f28f7;hb=b224b0da969d8997e573cc0005dc815b704c0398;hp=742ed761b419424a49de1aaec01a7924dcb5a933;hpb=d9c711515028066e36adac30016493455646c24f;p=samtools.git

diff --git a/misc/bamcheck.c b/misc/bamcheck.c
index 742ed76..efccf9a 100644
--- a/misc/bamcheck.c
+++ b/misc/bamcheck.c
@@ -983,7 +983,7 @@ void output_stats(stats_t *stats)
 
 void bam_init_header_hash(bam_header_t *header);
 
-size_t getline(char **line, size_t *n, FILE *fp)
+size_t mygetline(char **line, size_t *n, FILE *fp)
 {
     if (line == NULL || n == NULL || fp == NULL)
     {
@@ -1033,7 +1033,7 @@ void init_regions(stats_t *stats, char *file)
     ssize_t nread;
     int warned = 0;
     int prev_tid=-1, prev_pos=-1;
-    while ((nread = getline(&line, &len, fp)) != -1) 
+    while ((nread = mygetline(&line, &len, fp)) != -1) 
     {
         if ( line[0] == '#' ) continue;