X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=misc%2FMakefile;h=d36e7acb4a4c68956f3fed6dbcc16d9c042dc729;hb=607d7a0ab79152be4153fa09861cfa889488f2c7;hp=0a4854af4c285b6cd6fc748bee9834ed36c1b5ee;hpb=3fa88ab9a9a0a4f69d0180ccfa43f6e7b754b9ea;p=samtools.git

diff --git a/misc/Makefile b/misc/Makefile
index 0a4854a..d36e7ac 100644
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -4,7 +4,7 @@ CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
 CXXFLAGS=	$(CFLAGS)
 DFLAGS=		-D_FILE_OFFSET_BITS=64
 OBJS=		
-PROG=		md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim
+PROG=		md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim bamcheck
 INCLUDES=	-I..
 SUBDIRS=	.
 
@@ -27,6 +27,12 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 
 lib:
 
+bamcheck:bamcheck.o
+		$(CC) $(CFLAGS) -o $@ bamcheck.o -L.. -lm -lbam -lpthread -lz
+
+bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h
+		$(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c
+
 ace2sam:ace2sam.o
 		$(CC) $(CFLAGS) -o $@ ace2sam.o -lz