X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=misc%2FMakefile;h=d36e7acb4a4c68956f3fed6dbcc16d9c042dc729;hb=3a1bd4d97b4d58148b5a7fd845a3b6a023eecbed;hp=8a50ea30c9d4f6cfde4a77c0ce3efc00488e269e;hpb=0ab78ddb98818366103c11330526b8a2ea33a757;p=samtools.git

diff --git a/misc/Makefile b/misc/Makefile
index 8a50ea3..d36e7ac 100644
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -28,7 +28,7 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 lib:
 
 bamcheck:bamcheck.o
-		$(CC) $(CFLAGS) -o $@ bamcheck.o -lm -lz -L.. -lbam
+		$(CC) $(CFLAGS) -o $@ bamcheck.o -L.. -lm -lbam -lpthread -lz
 
 bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h
 		$(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c