X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=misc%2FMakefile;h=8a50ea30c9d4f6cfde4a77c0ce3efc00488e269e;hb=0ab78ddb98818366103c11330526b8a2ea33a757;hp=0a4854af4c285b6cd6fc748bee9834ed36c1b5ee;hpb=fbb4b1356096b31bb5f1956f864f4c76b21565f6;p=samtools.git

diff --git a/misc/Makefile b/misc/Makefile
index 0a4854a..8a50ea3 100644
--- a/misc/Makefile
+++ b/misc/Makefile
@@ -4,7 +4,7 @@ CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
 CXXFLAGS=	$(CFLAGS)
 DFLAGS=		-D_FILE_OFFSET_BITS=64
 OBJS=		
-PROG=		md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim
+PROG=		md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim bamcheck
 INCLUDES=	-I..
 SUBDIRS=	.
 
@@ -27,6 +27,12 @@ lib-recur all-recur clean-recur cleanlocal-recur install-recur:
 
 lib:
 
+bamcheck:bamcheck.o
+		$(CC) $(CFLAGS) -o $@ bamcheck.o -lm -lz -L.. -lbam
+
+bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h
+		$(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c
+
 ace2sam:ace2sam.o
 		$(CC) $(CFLAGS) -o $@ ace2sam.o -lz