X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=misc%2FHmmGlocal.java;h=9e93b13bf9be72a208dfda69abc8ffbb43b78f50;hb=0b3418cf166ce4a58cedf0d9a2df5ec3dd4cc5fa;hp=469eda654b376b7d76411af57ca18fdc22d70441;hpb=e97b0dda3c20982a5ed69136eb17cee3058c6e02;p=samtools.git

diff --git a/misc/HmmGlocal.java b/misc/HmmGlocal.java
index 469eda6..9e93b13 100644
--- a/misc/HmmGlocal.java
+++ b/misc/HmmGlocal.java
@@ -4,7 +4,7 @@ import java.lang.*;
 public class HmmGlocal
 {
 	private double[] qual2prob;
-	private double cd, ce; // gap open probility [1e-4], gap extension probability [0.1]
+	private double cd, ce; // gap open probility [1e-3], gap extension probability [0.1]
 	private int cb; // band width [7]
 
 	public HmmGlocal(final double d, final double e, final int b) {