X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mgclustercommand.h;h=ce3ffec189fa50d025a0fa0a1f39ef8faaa6da93;hb=cbaa068e77aeb15bb06f0695a36d8f757977ed64;hp=889586ae305ac47bdb0f2d15880507aa68655dff;hpb=e98d569d630c30d1ac3608eb6337bcec4765a724;p=mothur.git

diff --git a/mgclustercommand.h b/mgclustercommand.h
index 889586a..ce3ffec 100644
--- a/mgclustercommand.h
+++ b/mgclustercommand.h
@@ -47,6 +47,7 @@ private:
 	HCluster* hcluster;
 	ListVector* list;
 	ListVector oldList;
+    RAbundVector rav;
 	vector<seqDist> overlapMatrix;
 	vector<string> outputNames;
 	
@@ -55,13 +56,13 @@ private:
 	double cutoff;
 	float penalty;
 	int precision, length, precisionLength;
-	bool abort, minWanted, hclusterWanted, merge, hard;
+	bool abort, minWanted, hclusterWanted, merge, hard, large;
 	
 	void printData(ListVector*);
 	ListVector* mergeOPFs(map<string, int>, float);
 	void sortHclusterFiles(string, string);
 	vector<seqDist> getSeqs(ifstream&);
-    RAbundVector createRabund(ListVector, map<string, int>);
+    void createRabund(map<string, int>);
 
 };