X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mgclustercommand.h;h=ce3ffec189fa50d025a0fa0a1f39ef8faaa6da93;hb=2ecee16fec29d4c525f740ec19b27962ca09c050;hp=ea2c1de8603d746277017d8b557fcc5171c9af39;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/mgclustercommand.h b/mgclustercommand.h
index ea2c1de..ce3ffec 100644
--- a/mgclustercommand.h
+++ b/mgclustercommand.h
@@ -47,6 +47,7 @@ private:
 	HCluster* hcluster;
 	ListVector* list;
 	ListVector oldList;
+    RAbundVector rav;
 	vector<seqDist> overlapMatrix;
 	vector<string> outputNames;
 	
@@ -55,12 +56,13 @@ private:
 	double cutoff;
 	float penalty;
 	int precision, length, precisionLength;
-	bool abort, minWanted, hclusterWanted, merge, hard;
+	bool abort, minWanted, hclusterWanted, merge, hard, large;
 	
 	void printData(ListVector*);
 	ListVector* mergeOPFs(map<string, int>, float);
 	void sortHclusterFiles(string, string);
 	vector<seqDist> getSeqs(ifstream&);
+    void createRabund(map<string, int>);
 
 };