X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mgclustercommand.h;fp=mgclustercommand.h;h=f16a8f0c5ebc75bf07039a54d910d266e418b94e;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=4ef0bd90de3de904e51556e87e31163f4d08d0c7;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/mgclustercommand.h b/mgclustercommand.h
index 4ef0bd9..f16a8f0 100644
--- a/mgclustercommand.h
+++ b/mgclustercommand.h
@@ -24,7 +24,12 @@ class MGClusterCommand : public Command {
 
 public:
 	MGClusterCommand(string);
+	MGClusterCommand();
 	~MGClusterCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -37,6 +42,8 @@ private:
 	ListVector* list;
 	ListVector oldList;
 	vector<seqDist> overlapMatrix;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	
 	string blastfile, method, namefile, overlapFile, distFile, outputDir;
 	ofstream sabundFile, rabundFile, listFile;