X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mgclustercommand.cpp;h=a2079251c4af101750b317e3926eba75d5302c9c;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=97f0afdb366949d39e5af37a96c0211d9df0ca17;hpb=68d53ac6682978c5a023c1a3a4e5df6f8302d9fa;p=mothur.git

diff --git a/mgclustercommand.cpp b/mgclustercommand.cpp
index 97f0afd..a207925 100644
--- a/mgclustercommand.cpp
+++ b/mgclustercommand.cpp
@@ -240,7 +240,7 @@ int MGClusterCommand::execute(){
 			nameMap->readMap();
 		}else if (countfile != "") {
             ct = new CountTable();
-            ct->readTable(countfile, false);
+            ct->readTable(countfile, false, false);
             nameMap= new NameAssignment();
             vector<string> tempNames = ct->getNamesOfSeqs();
             for (int i = 0; i < tempNames.size(); i++) {  nameMap->push_back(tempNames[i]);  }
@@ -295,6 +295,7 @@ int MGClusterCommand::execute(){
             m->openOutputFile(rabundFileName,	rabundFile);
         }
 		m->openOutputFile(listFileName,	listFile);
+        list->printHeaders(listFile);
 		
 		if (m->control_pressed) { 
 			delete nameMap; delete read; delete list; delete rabund;