X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mgclustercommand.cpp;h=6eb9c7d72f99590ec22b2f4b8aa758057a7f24f2;hb=e189982e0a9b7352ad57cc38ccee675f128be22e;hp=6d5acb2386ad0ccd836ee41d2d8f5b24c5e4048e;hpb=aa9238c0a9e6e7aa0ed8b8b606b08ad4fd7dcfe3;p=mothur.git

diff --git a/mgclustercommand.cpp b/mgclustercommand.cpp
index 6d5acb2..6eb9c7d 100644
--- a/mgclustercommand.cpp
+++ b/mgclustercommand.cpp
@@ -538,12 +538,12 @@ ListVector* MGClusterCommand::mergeOPFs(map<string, int> binInfo, float dist){
 void MGClusterCommand::sortHclusterFiles(string unsortedDist, string unsortedOverlap) {
 	try {
 		//sort distFile
-		string sortedDistFile = sortFile(unsortedDist);
+		string sortedDistFile = sortFile(unsortedDist, outputDir);
 		remove(unsortedDist.c_str());  //delete unsorted file
 		distFile = sortedDistFile;
 		
 		//sort overlap file
-		string sortedOverlapFile = sortFile(unsortedOverlap);
+		string sortedOverlapFile = sortFile(unsortedOverlap, outputDir);
 		remove(unsortedOverlap.c_str());  //delete unsorted file
 		overlapFile = sortedOverlapFile;
 	}