X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mgclustercommand.cpp;h=477450475d479eb4308d9c2503086b9d7c03b051;hb=f509429e06e545bde69c97cacc0eb436775bd329;hp=a845e0bfe080782b2b12d2f1a634925781578d70;hpb=44f3a3c81a34fdee62550d98838a4b421e8df08e;p=mothur.git

diff --git a/mgclustercommand.cpp b/mgclustercommand.cpp
index a845e0b..4774504 100644
--- a/mgclustercommand.cpp
+++ b/mgclustercommand.cpp
@@ -268,7 +268,9 @@ int MGClusterCommand::execute(){
 		
         string sabundFileName = fileroot+ tag + "." + getOutputFileNameTag("sabund");
         string rabundFileName = fileroot+ tag + "." + getOutputFileNameTag("rabund");
-        string listFileName = fileroot+ tag + "." + getOutputFileNameTag("list");
+        string listFileName = fileroot+ tag + ".";
+        if (countfile != "") { listFileName += "unique_"; }
+        listFileName += getOutputFileNameTag("list");
         
         if (countfile == "") {
             m->openOutputFile(sabundFileName,	sabundFile);
@@ -287,7 +289,7 @@ int MGClusterCommand::execute(){
 		
 		if (!hclusterWanted) {
 			//get distmatrix and overlap
-			SparseMatrix* distMatrix = read->getDistMatrix();
+			SparseDistanceMatrix* distMatrix = read->getDistMatrix();
 			overlapMatrix = read->getOverlapMatrix(); //already sorted by read 
 			delete read;