X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mergefilecommand.cpp;h=c7e5b65e06b77107251b9f4164f4f722edaaeeb2;hb=432ddfdccc4ca0ed83c62747956a472af29e9183;hp=d431dd32ff17dcef5e267b1e93a47c8fc93b324b;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281;p=mothur.git

diff --git a/mergefilecommand.cpp b/mergefilecommand.cpp
index d431dd3..c7e5b65 100644
--- a/mergefilecommand.cpp
+++ b/mergefilecommand.cpp
@@ -24,6 +24,7 @@ vector<string> MergeFileCommand::getValidParameters(){
 //**********************************************************************************************************************
 MergeFileCommand::MergeFileCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["merge"] = tempOutNames;