X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=memchi2.cpp;fp=memchi2.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=f08b4b8561d9177fbd6f0a5a8f3337b95312e362;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/memchi2.cpp b/memchi2.cpp
deleted file mode 100644
index f08b4b8..0000000
--- a/memchi2.cpp
+++ /dev/null
@@ -1,61 +0,0 @@
-/*
- *  memchi2.cpp
- *  Mothur
- *
- *  Created by westcott on 12/17/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "memchi2.h"
-
-/***********************************************************************/
-EstOutput MemChi2::getValues(vector<SharedRAbundVector*> shared) {
-	try {
-		data.resize(1,0);
-		
-		int nonZeroA = 0;
-		int nonZeroB = 0;
-		int totalOtus = shared[0]->getNumBins();
-		//int totalGroups = shared.size();
-		
-		//for each otu
-		for (int i = 0; i < shared[0]->getNumBins(); i++) {
-			if (shared[0]->getAbundance(i) != 0) { nonZeroA++; }
-			if (shared[1]->getAbundance(i) != 0) { nonZeroB++; }
-		}
-		
-		double sum = 0.0;
-		for (int i = 0; i < shared[0]->getNumBins(); i++) {
-			int A = shared[0]->getAbundance(i);
-			int B = shared[1]->getAbundance(i);
-			
-			if (A > 0) { A = 1; }
-			if (B > 0) { B = 1; }
-			
-			double Aterm = A / (float) nonZeroA;
-			double Bterm = B / (float) nonZeroB;
-
-			int incidence = 0;
-			for(int j=0;j<shared.size();j++){
-				if(shared[j]->getAbundance(i) != 0){	incidence++;	}
-			}
-			
-			if(incidence != 0){
-				sum += (((Aterm-Bterm)*(Aterm-Bterm))/incidence);
-			}
-		}
-		
-		data[0] = sqrt(totalOtus * sum);
-		
-		if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-		
-		return data;
-	}
-	catch(exception& e) {
-		m->errorOut(e, "MemChi2", "getValues");
-		exit(1);
-	}
-}
-/***********************************************************************/
-