X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=matrixoutputcommand.cpp;h=7fbd83059dbc7ef882e889cbc7b9a7d8563d4b0c;hb=fd98ee6efb944d38bbd61fc36ea9fea2557e3830;hp=4ea8f021d3046a3f25be73b201869a73b98898ce;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/matrixoutputcommand.cpp b/matrixoutputcommand.cpp
index 4ea8f02..7fbd830 100644
--- a/matrixoutputcommand.cpp
+++ b/matrixoutputcommand.cpp
@@ -188,6 +188,11 @@ MatrixOutputCommand::MatrixOutputCommand(string option)  {
 				 if (calc == "default")  {  calc = "jclass-thetayc";  }
 			}
 			m->splitAtDash(calc, Estimators);
+			if (m->inUsersGroups("citation", Estimators)) { 
+				ValidCalculators validCalc; validCalc.printCitations(Estimators); 
+				//remove citation from list of calcs
+				for (int i = 0; i < Estimators.size(); i++) { if (Estimators[i] == "citation") {  Estimators.erase(Estimators.begin()+i); break; } }
+			}
 
 			if (abort == false) {