X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=mantelcommand.h;h=644d9b21ded9302bc8be1eff6b011b17fec278ac;hb=078d7227da8dda9ae8620822fa32d51ec2706fc3;hp=1a6f27b523e24dc0e6d702649eea33dad995a876;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git diff --git a/mantelcommand.h b/mantelcommand.h index 1a6f27b..644d9b2 100644 --- a/mantelcommand.h +++ b/mantelcommand.h @@ -22,9 +22,11 @@ public: vector setParameters(); string getCommandName() { return "mantel"; } string getCommandCategory() { return "Hypothesis Testing"; } + string getOutputFileNameTag(string, string); string getHelpString(); - string getCitation() { return "Sokal, R. R., & Rohlf, F. J. (1995). Biometry, 3rd edn. New York: Freeman. http://www.mothur.org/wiki/Mantel"; } - + string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Mantel"; } + string getDescription() { return "Mantel’s test for correlation between matrices"; } + int execute(); void help() { m->mothurOut(getHelpString()); }