X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fyule.cov.Rd;h=9710a94d743e4a091bc60b6a5eb2cc410b4eeee0;hb=refs%2Fheads%2Fmaster;hp=7e3b1a2fb395989daf87661fa8feed9d04864da2;hpb=91cbce9b55b05cef1f7167f646bc30b3e568ebf9;p=ape.git diff --git a/man/yule.cov.Rd b/man/yule.cov.Rd index 7e3b1a2..9710a94 100644 --- a/man/yule.cov.Rd +++ b/man/yule.cov.Rd @@ -43,7 +43,7 @@ yule.cov(phy, formula, data = NULL) \item a phylogenetic tree which may contain multichotomies; \item a formula which specifies the predictors of the model described - above: this is given as a standard R formula and has no response (no + above: this is given as a standard \R formula and has no response (no left-hand side term), for instance: \code{~ x + y}, it can include interactions (\code{~ x + a * b}) (see \code{\link[stats]{formula}} for details); @@ -55,7 +55,7 @@ yule.cov(phy, formula, data = NULL) be equal to the number of tips of the tree + the number of nodes. The order is the following: first the values for the tips in the same order than for the labels, then the values for the nodes sequentially - from the root to the most terminal nodes (i.e. in the order given by + from the root to the most terminal nodes (i.e., in the order given by \code{phy$edge}). } @@ -78,7 +78,7 @@ method. This can be done with the function \code{\link{ace}}. Paradis, E. (2005) Statistical analysis of diversification with species traits. \emph{Evolution}, \bold{59}, 1--12. } -\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} +\author{Emmanuel Paradis} \seealso{ \code{\link{branching.times}}, \code{\link{diversi.gof}}, \code{\link{diversi.time}}, \code{\link{ltt.plot}},