X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fwrite.tree.Rd;h=7a512449ff3ee64f126b6d527e35a2f1374c04ec;hb=199144b0297c3fc76d76c29e561151235e39f0af;hp=70e1967526120a97314300b9a94c0b09943a3d34;hpb=438bbfbfd282046d154aab68dc5304ffbe94f4d1;p=ape.git

diff --git a/man/write.tree.Rd b/man/write.tree.Rd
index 70e1967..7a51244 100644
--- a/man/write.tree.Rd
+++ b/man/write.tree.Rd
@@ -6,7 +6,7 @@ write.tree(phy, file = "", append = FALSE,
            digits = 10, tree.names = FALSE)
 }
 \arguments{
-  \item{phy}{an object of class \code{"phylo"}.}
+  \item{phy}{an object of class \code{"phylo"} or \code{"multiPhylo"}.}
   \item{file}{a file name specified by either a variable of mode character,
     or a double-quoted string; if \code{file = ""} (the default) then the
     tree is written on the standard output connection (i.e. the console).}
@@ -26,7 +26,7 @@ write.tree(phy, file = "", append = FALSE,
 }
 \value{
   a vector of mode character if \code{file = ""}, none (invisible
-  `NULL') otherwise.
+  \code{NULL}) otherwise.
 }
 \details{
   The node labels and the root edge length, if available, are written in
@@ -34,7 +34,9 @@ write.tree(phy, file = "", append = FALSE,
 
   If \code{tree.names == TRUE} then a variant of the Newick format is
   written for which the name of a tree precedes the Newick format tree
-  (parentheses are eventually deleted beforehand).
+  (parentheses are eventually deleted beforehand). The tree names are
+  taken from the \code{names} attribute if present (they are ignored if
+  \code{tree.names} is a character vector).
 }
 \references{
   Felsenstein, J. The Newick tree format.
@@ -44,8 +46,9 @@ write.tree(phy, file = "", append = FALSE,
   \url{http://evolution.genetics.washington.edu/phylip/newick_doc.html}
 }
 
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr} and Daniel
-  Lawson \email{dan.lawson@bristol.ac.uk}}
+\author{Emmanuel Paradis, Daniel Lawson
+  \email{dan.lawson@bristol.ac.uk}, and Klaus Schliep
+  \email{kschliep@snv.jussieu.fr}}
 \seealso{
   \code{\link{read.tree}}, \code{\link{read.nexus}},
   \code{\link{write.nexus}}