X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fwrite.nexus.Rd;h=b9713add7e1ecf51d2c9f12dc79a0864f6544520;hb=c488b74490ee3d9d200de0e471881f002a18fe4f;hp=fb5d653c834c4c252666856ab6263983e03ec5f1;hpb=8e2e1ceb81f455bcb7b184d114913295d67b93c4;p=ape.git

diff --git a/man/write.nexus.Rd b/man/write.nexus.Rd
index fb5d653..b9713ad 100644
--- a/man/write.nexus.Rd
+++ b/man/write.nexus.Rd
@@ -2,7 +2,7 @@
 \alias{write.nexus}
 \title{Write Tree File in Nexus Format}
 \usage{
-write.nexus(..., file = "", translate = TRUE, original.data = TRUE)
+write.nexus(..., file = "", translate = TRUE)
 }
 \arguments{
   \item{\dots}{either (i) a single object of class \code{"phylo"}, (ii) a
@@ -14,22 +14,15 @@ write.nexus(..., file = "", translate = TRUE, original.data = TRUE)
   \item{translate}{a logical, if \code{TRUE} (the default) a translation
     of the tip labels is done which are replaced in the parenthetic
     representation with tokens.}
-  \item{original.data}{a logical, if \code{TRUE} (the default) the
-    data in the original NEXUS file are eventually written in
-    \code{"file"} (see below).}
 }
 \description{
   This function writes trees in a file with the NEXUS format.
 }
 \details{
-  If \code{original.data = TRUE}, the file as specified by the attribute
-  \code{"origin"} of the first tree is read and its data (except the
-  trees) are written in \code{file}.
-
-  If several trees are given, they must have all the same tip labels.
+  If several trees are given, they must all have the same tip labels.
 
   If among the objects given some are not trees of class \code{"phylo"},
-  they are simply skipped and not written to the file.
+  they are simply skipped and not written in the file.
 }
 \value{
   None (invisible `NULL').
@@ -40,7 +33,7 @@ write.nexus(..., file = "", translate = TRUE, original.data = TRUE)
     Biology}, \bold{46}, 590--621.
 }
 
-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}
 \seealso{
   \code{\link{read.nexus}}, \code{\link{read.tree}},
   \code{\link{write.tree}}, \code{\link{read.nexus.data}},