X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fsubtreeplot.Rd;h=33f846993f5586383387a6a0cad685dad75d29b9;hb=0eea4e45fea5cbcd63d5b257578579d52970d68c;hp=c9f80cee949ee3ded03824a218ef4561410da23d;hpb=a3ddfc06dd47c560b3ec5869ac104b0c68441eb1;p=ape.git diff --git a/man/subtreeplot.Rd b/man/subtreeplot.Rd index c9f80ce..33f8469 100644 --- a/man/subtreeplot.Rd +++ b/man/subtreeplot.Rd @@ -6,13 +6,13 @@ (supposedly large) and a portion of it determined by clicking on the nodes of the phylogeny. On exit, returns the last subtree visualized. } \usage{ -subtreeplot(phy, wait=FALSE, ...) +subtreeplot(x, wait=FALSE, ...) } \arguments{ \item{x}{an object of class \code{"phylo"}.} \item{wait}{a logical indicating whether the node beeing processed should be printed (useful for big phylogenies).} - \item{...}{further arguments passed to \code{plot.phylo}.} + \item{\dots}{further arguments passed to \code{plot.phylo}.} } \details{ This function aims at easily exploring very large trees. The main argument is @@ -28,12 +28,14 @@ subtreeplot(phy, wait=FALSE, ...) \code{\link{plot.phylo}}, \code{\link{drop.tip}}, \code{\link{subtrees}} } \examples{ +\dontrun{ #example 1: simple -tree1<-rtree(50) #random tree with 50 leaves -tree2<-subtreeplot(tree1, wait=TRUE) # on exit, tree2 will be a subtree of tree1. +tree1 <- rtree(50) +tree2 <- subtreeplot(tree1, wait = TRUE) # on exit, tree2 will be a subtree of tree1 #example 2: more than one zoom -tree1<-rtree(60) -tree2<-subtreeplot(subtreeplot(subtreeplot(tree1))) #allows three succssive zooms. +tree1 <- rtree(60) +tree2 <- subtreeplot(subtreeplot(subtreeplot(tree1))) # allow three succssive zooms +} } \keyword{hplot}