X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fsh.test.Rd;h=57e6a5d5ecad3d4981061cb70489b1544666efb6;hb=42bf3d36a0a2a5edd0071739ad346ae9009abffa;hp=ec367cd567b60c936d002fcffbb7cdde39685b3c;hpb=c827059eeafc8cbe41c812b26979543ab287803e;p=ape.git diff --git a/man/sh.test.Rd b/man/sh.test.Rd index ec367cd..57e6a5d 100644 --- a/man/sh.test.Rd +++ b/man/sh.test.Rd @@ -7,8 +7,7 @@ sh.test(..., x, model = DNAmodel(), B = 100) \arguments{ \item{...}{either a series of objects of class \code{"phylo"} separated by commas, or a list containing such objects.} - \item{x}{a list, a matrix, or a data frame containing the (aligned) - DNA sequences.} + \item{x}{a list or a matrix containing the (aligned) DNA sequences.} \item{model}{the model to be fitted to each tree (as an object of \code{"DNAmodel"}).} \item{B}{the number of bootstrap replicates.} @@ -19,9 +18,9 @@ sh.test(..., x, model = DNAmodel(), B = 100) } \details{ The present implementation follows the original formulation of - Shimodaira and Hasegawa (1999). A difference is that the bootstrap + Shimodaira and Hasegawa (1999) with the difference that the bootstrap resampling is done on the original sequence data rather than the RELL - method as sugested by Shimodaira and Hasegawa. + method suggested by Shimodaira and Hasegawa. } \value{ a numeric vector with the P-value associated with each tree given in