X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Froot.Rd;h=6559a690eaab39e7fd713c96886e8945a0969b84;hb=d7105238f98acefc5fc0ad6278a515e682453b8b;hp=35295b893a94f1d61e42d2d285149fd9f169728e;hpb=1d0651b1374592d87400614a03b34b4e0cc63aae;p=ape.git diff --git a/man/root.Rd b/man/root.Rd index 35295b8..6559a69 100644 --- a/man/root.Rd +++ b/man/root.Rd @@ -4,7 +4,7 @@ \alias{is.rooted} \title{Roots Phylogenetic Trees} \usage{ -root(phy, outgroup, node = NULL, resolve.root = FALSE) +root(phy, outgroup, node = NULL, resolve.root = FALSE, interactive = FALSE) unroot(phy) is.rooted(phy) } @@ -15,6 +15,8 @@ is.rooted(phy) \item{node}{alternatively, a node number where to root the tree.} \item{resolve.root}{a logical specifying whether to resolve the new root as a bifurcating node.} + \item{interactive}{if \code{TRUE} the user is asked to select the node + by clicking on the tree which must be plotted.} } \description{ \code{root} reroots a phylogenetic tree with respect to the specified @@ -52,7 +54,7 @@ is.rooted(phy) an object of class \code{"phylo"} for \code{root} and \code{unroot}; a single logical value for \code{is.rooted}. } -\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} +\author{Emmanuel Paradis} \seealso{ \code{\link{bind.tree}}, \code{\link{drop.tip}}, \code{\link{nodelabels}}, \code{\link{identify.phylo}}