X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Frlineage.Rd;h=c37bd6d405ec21ad627d4d621bd08a5d79cfffbd;hb=ce466967e4824b3f6aec6f75798da08fe8c10666;hp=5b2056808ebfd31e8e1070fb82e15da3004c4cd2;hpb=6603d33385e67db10a1d48f3ab7ec1910ce295ca;p=ape.git diff --git a/man/rlineage.Rd b/man/rlineage.Rd index 5b20568..c37bd6d 100644 --- a/man/rlineage.Rd +++ b/man/rlineage.Rd @@ -35,7 +35,7 @@ drop.fossil(phy, tol = 1e-8) Both functions use continuous-time algorithms described in the references. The models are time-dependent birth--death models as described in Kendall (1948). Speciation (birth) and extinction (death) - rates may be constant or vary through time according to an R function + rates may be constant or vary through time according to an \R function specified by the user. In the latter case, \code{BIRTH} and/or \code{DEATH} may be used of the primitives of \code{birth} and \code{death} are known. In these functions time is the formal argument @@ -48,9 +48,9 @@ drop.fossil(phy, tol = 1e-8) Kendall, D. G. (1948) On the generalized ``birth-and-death'' process. \emph{Annals of Mathematical Statistics}, \bold{19}, 1--15. - Paradis, E. (2010) Time-dependent speciation and extinction from - phylogenies: a least squares approach. \emph{Evolution} (in press) - %, \bold{59}, 1--12. + Paradis, E. (2011) Time-dependent speciation and extinction from + phylogenies: a least squares approach. \emph{Evolution}, \bold{65}, + 661--672. } \author{Emmanuel Paradis} \seealso{