X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fread.nexus.Rd;h=8a668d1e2db0e8eaf502dd8efca5b922e4a76ba6;hb=fb6a06e39b9c580b39c76fd95e950144e818f45d;hp=a517e8991ab156510612f5c80fd6d86cde105ee9;hpb=1090d5990d4b6f7feb10c87638f4229f53891eb7;p=ape.git diff --git a/man/read.nexus.Rd b/man/read.nexus.Rd index a517e89..8a668d1 100644 --- a/man/read.nexus.Rd +++ b/man/read.nexus.Rd @@ -60,19 +60,13 @@ read.nexus(file, tree.names = NULL) If several trees are read in the file, the returned object is of class \code{"multiPhylo"}, and is a list of objects of class \code{"phylo"}. - - An attribute \code{"origin"} is further given to the returned object - which gives the name of the source file (with its path). This is used - to write a tree in a NEXUS file where all the original data must be - written (not only the tree) in accordance to the specifications of - Maddison et al. (1997). } \references{ Maddison, D. R., Swofford, D. L. and Maddison, W. P. (1997) NEXUS: an extensible file format for systematic information. \emph{Systematic Biology}, \bold{46}, 590--621. } -\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} +\author{Emmanuel Paradis} \seealso{ \code{\link{read.tree}}, \code{\link{write.nexus}}, \code{\link{write.tree}}, \code{\link{read.nexus.data}},