X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fread.dna.Rd;h=f2f2cff005f461a4c6f992f1e17276007fdac9a3;hb=8e2e1ceb81f455bcb7b184d114913295d67b93c4;hp=af26aa7b1655fa90148f6edc23a5a1fcb5888ab4;hpb=a1b67d97d7bf71af111e8675588c78dfc41a0bed;p=ape.git diff --git a/man/read.dna.Rd b/man/read.dna.Rd index af26aa7..f2f2cff 100644 --- a/man/read.dna.Rd +++ b/man/read.dna.Rd @@ -46,7 +46,8 @@ read.dna(file, format = "interleaved", skip = 0, sequential formats, see below). The names of the sequences are read in the file unless the `seq.names' option is used. Particularities for each format are detailed below. - + +\itemize{ \item{Interleaved:}{the function starts to read the sequences when it finds 10 contiguous characters belonging to the ambiguity code of the IUPAC (namely A, C, G, T, U, M, R, W, S, Y, K, V, H, D, B, and @@ -73,7 +74,7 @@ read.dna(file, format = "interleaved", skip = 0, leading spaces before this character). These lines are taken as taxa names after removing the ``>'' and the possible leading and trailing spaces. All the data in the file before the first sequence is ignored.} -} +}} \value{ a matrix or a list (if \code{format = "fasta"}) of DNA sequences stored in binary format, or of mode character (if \code{as.character =