X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fread.dna.Rd;h=4c02232ba8d332708162c35d257fdac66066415b;hb=9f4eb32b3354f76ec0f13f9ca58ad63b082fecca;hp=af26aa7b1655fa90148f6edc23a5a1fcb5888ab4;hpb=a1b67d97d7bf71af111e8675588c78dfc41a0bed;p=ape.git diff --git a/man/read.dna.Rd b/man/read.dna.Rd index af26aa7..4c02232 100644 --- a/man/read.dna.Rd +++ b/man/read.dna.Rd @@ -47,6 +47,7 @@ read.dna(file, format = "interleaved", skip = 0, the file unless the `seq.names' option is used. Particularities for each format are detailed below. +\itemize{ \item{Interleaved:}{the function starts to read the sequences when it finds 10 contiguous characters belonging to the ambiguity code of the IUPAC (namely A, C, G, T, U, M, R, W, S, Y, K, V, H, D, B, and @@ -73,7 +74,7 @@ read.dna(file, format = "interleaved", skip = 0, leading spaces before this character). These lines are taken as taxa names after removing the ``>'' and the possible leading and trailing spaces. All the data in the file before the first sequence is ignored.} -} +}} \value{ a matrix or a list (if \code{format = "fasta"}) of DNA sequences stored in binary format, or of mode character (if \code{as.character = @@ -94,7 +95,7 @@ read.dna(file, format = "interleaved", skip = 0, \code{\link{read.GenBank}}, \code{\link{write.dna}}, \code{\link{DNAbin}}, \code{\link{dist.dna}}, \code{\link{woodmouse}} } -\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}} +\author{Emmanuel Paradis} \examples{ ### a small extract from `data(woddmouse)' cat("3 40",