X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2FrTraitDisc.Rd;h=e65a54b29604ada34b0492d229b6ff63d23d159b;hb=d7105238f98acefc5fc0ad6278a515e682453b8b;hp=967042eeaa135f3807af16641254a6f2fbe334e6;hpb=24fc6c03893f85a3f9ab3d088201b3731f3035b4;p=ape.git diff --git a/man/rTraitDisc.Rd b/man/rTraitDisc.Rd index 967042e..e65a54b 100644 --- a/man/rTraitDisc.Rd +++ b/man/rTraitDisc.Rd @@ -24,6 +24,8 @@ rTraitDisc(phy, model = "ER", k = if (is.matrix(model)) ncol(model) else 2, \item{root.value}{an integer giving the value at the root (by default, it's the first state). To have a random value, use \code{root.value = sample(k)}.} + \item{\dots}{further arguments passed to \code{model} if it is a + function.} } \description{ This function simulates the evolution of a discrete character along a @@ -42,7 +44,7 @@ rTraitDisc(phy, model = "ER", k = if (is.matrix(model)) ncol(model) else 2, always ignored. The arguments \code{k} and \code{rate} are ignored.} \item{A character:}{these are the same short-cuts than in the function - \link{\code{ace}}: \code{"ER"} is an equal-rates model, \code{"ARD"} + \code{\link{ace}}: \code{"ER"} is an equal-rates model, \code{"ARD"} is an all-rates-different model, and \code{"SYM"} is a symmetrical model. Note that the argument \code{rate} must be of the appropriate length, i.e., 1, \eqn{k(k - 1)}, or \eqn{k(k - 1)/2} for the three models,