X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2FrTraitCont.Rd;h=2251c8594bb5765ecd589c8103e31a4699d94204;hb=12b407de3b6d3a160eb2ebd48d005da328735206;hp=50fd073c33bbe3987c82fa23b4d6ae055b5860d5;hpb=c3c9c0a9590fabd2996543a4789c84634b7aca71;p=ape.git

diff --git a/man/rTraitCont.Rd b/man/rTraitCont.Rd
index 50fd073..2251c85 100644
--- a/man/rTraitCont.Rd
+++ b/man/rTraitCont.Rd
@@ -26,7 +26,7 @@ rTraitCont(phy, model = "BM", sigma = 0.1, alpha = 1, theta = 0,
 \description{
   This function simulates the evolution of a continuous character along a
   phylogeny. The calculation is done recursively from the root. See
-  Paradis (2006, p. 151) for a brief introduction.
+  Paradis (2012, pp. 232 and 324) for an introduction.
 }
 \details{
   There are three possibilities to specify \code{model}:
@@ -62,8 +62,8 @@ rTraitCont(phy, model = "BM", sigma = 0.1, alpha = 1, theta = 0,
   Ornstein-Uhlenbeck process and its integral. \emph{Physical Review E},
   \bold{54}, 2084--2091.
 
-  Paradis, E. (2006) \emph{Analyses of Phylogenetics and Evolution with
-    R.} New York: Springer.
+  Paradis, E. (2012) \emph{Analysis of Phylogenetics and Evolution with
+    R (Second Edition).} New York: Springer.
 }
 \author{Emmanuel Paradis}
 \seealso{
@@ -73,7 +73,7 @@ rTraitCont(phy, model = "BM", sigma = 0.1, alpha = 1, theta = 0,
 data(bird.orders)
 rTraitCont(bird.orders) # BM with sigma = 0.1
 ### OU model with two optima:
-tr <- reorder(bird.orders, "p")
+tr <- reorder(bird.orders, "postorder")
 plot(tr)
 edgelabels()
 theta <- rep(0, Nedge(tr))