X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fprint.phylo.Rd;h=0a78b9624f59aaa51c78989409f049781b05c6e5;hb=24fc6c03893f85a3f9ab3d088201b3731f3035b4;hp=f0b83a462b517a6ac141489092fcd246374dd89a;hpb=c827059eeafc8cbe41c812b26979543ab287803e;p=ape.git diff --git a/man/print.phylo.Rd b/man/print.phylo.Rd index f0b83a4..0a78b96 100644 --- a/man/print.phylo.Rd +++ b/man/print.phylo.Rd @@ -2,27 +2,39 @@ \alias{print.phylo} \alias{print.multiPhylo} \alias{[.multiPhylo} +\alias{[[.multiPhylo} +\alias{$.multiPhylo} +\alias{str.multiPhylo} \title{Compact Display of a Phylogeny} \usage{ \method{print}{phylo}(x, printlen = 6 ,...) \method{print}{multiPhylo}(x, details = FALSE ,...) \method{[}{multiPhylo}(x, i) +\method{[[}{multiPhylo}(x, i) +\method{$}{multiPhylo}(x, name) +\method{str}{multiPhylo}(object, ...) } \arguments{ \item{x}{an object of class \code{"phylo"} or \code{"multiPhylo"}.} + \item{object}{an object of class \code{"multiPhylo"}.} \item{printlen}{the number of labels to print (6 by default).} \item{details}{a logical indicating whether to print information on all trees.} - \item{i}{indices of the trees to select from a list; this may be a + \item{i}{indices of the tree(s) to select from a list; this may be a vector of integers, logicals, or names.} - \item{...}{further arguments passed to or from other methods.} + \item{name}{a character string specifying the tree to be extracted.} + \item{\dots}{further arguments passed to or from other methods.} } \description{ These functions prints a compact summary of a phylogeny, or a list of, on the console. + + The operators \code{[}, \code{[[}, and \code{$} propagate the class + correctly. } \value{ - An object of class \code{"multiPhylo"} or NULL. + An object of class \code{"phylo"} (\code{[[}, \code{$}) or of class + \code{"multiPhylo"} (\code{[[}), or NULL. } \author{Ben Bolker \email{bolker@zoo.ufl.edu} and Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}