X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fplot.phylo.Rd;h=f19db415317559caa2c338cf9d3b677b6ad6d3db;hb=46bc16a7531d871fccb6ea7c2a31d980aac21bd1;hp=2a07ba0c5726429286c1fe45d2371537fb555f75;hpb=e64b298d9074561ebd0b07859e959fcc0dc980b2;p=ape.git diff --git a/man/plot.phylo.Rd b/man/plot.phylo.Rd index 2a07ba0..f19db41 100644 --- a/man/plot.phylo.Rd +++ b/man/plot.phylo.Rd @@ -9,7 +9,8 @@ cex = par("cex"), adj = NULL, srt = 0, no.margin = FALSE, root.edge = FALSE, label.offset = 0, underscore = FALSE, x.lim = NULL, y.lim = NULL, direction = "rightwards", - lab4ut = "horizontal", tip.color = "black", draw = TRUE, ...) + lab4ut = "horizontal", tip.color = "black", plot = TRUE, + rotate.tree = 0, ...) \method{plot}{multiPhylo}(x, layout = 1, ...) } \arguments{ @@ -90,12 +91,15 @@ \code{type = "unrooted"}.} \item{tip.color}{the colours used for the tip labels, eventually recycled (see examples).} - \item{draw}{a logical controlling whether to draw the tree. If + \item{plot}{a logical controlling whether to draw the tree. If \code{FALSE}, the graphical device is set as if the tree was plotted, and the coordinates are saved as well.} \item{layout}{the number of trees to be plotted simultaneously.} \item{\dots}{further arguments to be passed to \code{plot} or to \code{plot.phylo}.} + \item{rotate.tree}{for "fan", "unrooted", or "radial" trees: the + rotation of the whole tree in degrees (negative values are + accepted).} } \description{ These functions plot phylogenetic trees on the current graphical