X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=man%2Fplot.phylo.Rd;h=371266945e3a489ffb2ee6f6b3b8749c9305c8e8;hb=a0436318d70829a2d16134be7ca1d6d454613a20;hp=f19db415317559caa2c338cf9d3b677b6ad6d3db;hpb=46bc16a7531d871fccb6ea7c2a31d980aac21bd1;p=ape.git diff --git a/man/plot.phylo.Rd b/man/plot.phylo.Rd index f19db41..3712669 100644 --- a/man/plot.phylo.Rd +++ b/man/plot.phylo.Rd @@ -10,7 +10,7 @@ root.edge = FALSE, label.offset = 0, underscore = FALSE, x.lim = NULL, y.lim = NULL, direction = "rightwards", lab4ut = "horizontal", tip.color = "black", plot = TRUE, - rotate.tree = 0, ...) + rotate.tree = 0, open.angle = 0, ...) \method{plot}{multiPhylo}(x, layout = 1, ...) } \arguments{ @@ -94,12 +94,15 @@ \item{plot}{a logical controlling whether to draw the tree. If \code{FALSE}, the graphical device is set as if the tree was plotted, and the coordinates are saved as well.} - \item{layout}{the number of trees to be plotted simultaneously.} - \item{\dots}{further arguments to be passed to \code{plot} or to - \code{plot.phylo}.} \item{rotate.tree}{for "fan", "unrooted", or "radial" trees: the rotation of the whole tree in degrees (negative values are accepted).} + \item{open.angle}{if \code{type = "f"}, the angle in degrees left + blank. Use a non-zero value if you want to call + \code{\link{axisPhylo}} after the tree is plotted.} + \item{layout}{the number of trees to be plotted simultaneously.} + \item{\dots}{further arguments to be passed to \code{plot} or to + \code{plot.phylo}.} } \description{ These functions plot phylogenetic trees on the current graphical